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Record Information
Version2.0
Creation Date2015-06-04 19:13:10 -0600
Update Date2015-08-05 16:22:05 -0600
Secondary Accession Numbers
  • ECMDB23840
Identification
Name:alpha-D-Ribose 1,2-cyclic phosphate 5-phosphate
DescriptionA ribose bisphosphate that is the cyclic-1,2-phosphate derivative of 5-phospho-α-D-ribose
Structure
Thumb
Synonyms:
  • 5-O-phosphono-a-D-Ribofuranose 1,2-(hydrogen phosphate)
  • 5-O-phosphono-a-D-Ribofuranose 1,2-(hydrogen phosphoric acid)
  • 5-O-phosphono-alpha-D-Ribofuranose 1,2-(hydrogen phosphate)
  • 5-O-phosphono-alpha-D-Ribofuranose 1,2-(hydrogen phosphoric acid)
  • 5-O-phosphono-α-D-ribofuranose 1,2-(hydrogen phosphate)
  • 5-O-phosphono-α-D-ribofuranose 1,2-(hydrogen phosphoric acid)
  • 5-Phospho-α-D-ribose 1,2-cyclic phosphate
  • a-D-Ribose 1,2-cyclic phosphate 5-phosphate
  • a-D-Ribose 1,2-cyclic phosphoric acid 5-phosphoric acid
  • alpha-D-Ribose 1,2-cyclic phosphoric acid 5-phosphoric acid
  • PRCP
  • α-D-ribose 1,2-cyclic phosphate 5-phosphate
  • α-D-Ribose 1,2-cyclic phosphate 5-phosphate
  • α-D-ribose 1,2-cyclic phosphoric acid 5-phosphoric acid
  • α-D-Ribose 1,2-cyclic phosphoric acid 5-phosphoric acid
Chemical Formula:C5H10O10P2
Weight:Average: 292.073
Monoisotopic: 291.974920518
InChI Key:OXGUIUWFXGIWNM-TXICZTDVSA-N
InChI:InChI=1S/C5H10O10P2/c6-3-2(1-12-16(7,8)9)13-5-4(3)14-17(10,11)15-5/h2-6H,1H2,(H,10,11)(H2,7,8,9)/t2-,3-,4-,5-/m1/s1
CAS number:Not Available
IUPAC Name:{[(3aR,5R,6R,6aR)-2,6-dihydroxy-2-oxo-tetrahydro-2H-2λ⁵-furo[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxy}phosphonic acid
Traditional IUPAC Name:[(3aR,5R,6R,6aR)-2,6-dihydroxy-2-oxo-tetrahydro-2λ⁵-furo[2,3-d][1,3,2]dioxaphosphol-5-yl]methoxyphosphonic acid
SMILES:O[C@@H]1[C@@H](COP(O)(O)=O)O[C@@H]2OP(O)(=O)O[C@H]12
Chemical Taxonomy
Description belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentPentose phosphates
Alternative Parents
Substituents
  • Pentose phosphate
  • Pentose-5-phosphate
  • Monosaccharide phosphate
  • Monoalkyl phosphate
  • Organic phosphoric acid derivative
  • Alkyl phosphate
  • Phosphoric acid ester
  • 1,3_dioxaphospholane
  • Tetrahydrofuran
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Hydrocarbon derivative
  • Organic oxide
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External Descriptors
Physical Properties
State:Not Available
Charge:-3
Melting point:Not Available
Experimental Properties:
PropertyValueSource
Predicted Properties
PropertyValueSource
Water Solubility20.6 g/LALOGPS
logP-1.2ALOGPS
logP-1.7ChemAxon
logS-1.1ALOGPS
pKa (Strongest Acidic)1.04ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area151.98 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity47.93 m³·mol⁻¹ChemAxon
Polarizability21.28 ųChemAxon
Number of Rings2ChemAxon
Bioavailability1ChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Biological Properties
Cellular Locations:Cytoplasm
Reactions:
SMPDB Pathways:
methylphosphonate degradation IPW002065 ThumbThumb?image type=greyscaleThumb?image type=simple
KEGG Pathways:
  • Phosphonate and phosphinate metabolism ec00440
EcoCyc Pathways:Not Available
Concentrations
Not Available
Spectra
Spectra:
Spectrum TypeDescriptionSplash Key
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_4_1) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0007-1690000000-d822c489f37b24ff2975View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0002-6950000000-ffcb5885e5ecb4a2905aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0005-9400000000-03837736df41b9fe2d72View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-002f-6190000000-409357fcff55c5c65e9eView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-9010000000-43b002ba2f4ac1d81b59View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-9000000000-f05162e8bfcafc437f6eView in MoNA
MSMass Spectrum (Electron Ionization)Not AvailableView in JSpectraViewer
References
References:Not Available
Synthesis Reference:Not Available
Material Safety Data Sheet (MSDS)Not Available
External Links:
ResourceLink
CHEBI ID68689
HMDB IDNot Available
Pubchem Compound ID14035690
Kegg IDC20440
ChemSpider IDNot Available
Wikipedia IDNot Available
BioCyc IDNot Available

Enzymes

General function:
organic phosphonate catabolic process
Specific function:
Catalyzes the hydrolysis of the cyclic ribose-phosphate to form alpha-D-ribose 1,5-bisphosphate.
Gene Name:
phnP
Uniprot ID:
P16692
Molecular weight:
27847
Reactions
5-phospho-alpha-D-ribose 1,2-cyclic phosphate + H(2)O = alpha-D-ribose 1,5-bisphosphate
General function:
organic phosphonate catabolic process
Specific function:
Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose 1,2-cyclic phosphate 5-phosphate (PRcP).
Gene Name:
phnJ
Uniprot ID:
P16688
Molecular weight:
31844
Reactions
Alpha-D-ribose 1-methylphosphonate 5-phosphate = alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + methane