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Record Information
Version2.0
Creation Date2012-05-31 10:27:06 -0600
Update Date2015-09-13 12:56:08 -0600
Secondary Accession Numbers
  • ECMDB00510
Identification
Name:Aminoadipic acid
DescriptionAminoadipic acid is metabolite in the principal biochemical pathway of lysine. The major outer membrane proteins from Escherichia coli K-12 are often modified to contain alpha-aminoadipic acid delta-semialdehyde (allysine). [PMID:358196]. Amiinoadipic acid can be decarboxylated by glutmate decarboxylase [PMID:379598]
Structure
Thumb
Synonyms:
  • (+/-)-2-Aminoadipate
  • (+/-)-2-Aminoadipic acid
  • 2-Aminoadipate
  • 2-Aminoadipic acid
  • a-amino-Adipate
  • a-amino-Adipic acid
  • A-Aminoadipate
  • A-Aminoadipic acid
  • alpha-amino-Adipate
  • Alpha-Amino-adipic acid
  • Alpha-Aminoadipate
  • Alpha-Aminoadipic acid
  • Aminoadipate
  • DL-2-Aminoadipate
  • DL-2-Aminoadipic acid
  • DL-2-Aminohexanedioate
  • DL-2-Aminohexanedioic acid
  • DL-a-Aminoadipate
  • DL-a-Aminoadipic acid
  • DL-alpha-Aminoadipate
  • DL-alpha-Aminoadipic acid
  • DL-α-Aminoadipate
  • DL-α-Aminoadipic acid
  • L-2-aminoadipate
  • L-2-Aminoadipic acid
  • L-2-Aminohexanedioate
  • L-2-Aminohexanedioic acid
  • L-a-Aminoadipate
  • L-a-Aminoadipic acid
  • L-alpha-Aminoadipate
  • L-alpha-Aminoadipic acid
  • L-α-Aminoadipate
  • L-α-Aminoadipic acid
  • α-amino-Adipate
  • α-amino-Adipic acid
  • α-Aminoadipate
  • α-Aminoadipic acid
Chemical Formula:C6H11NO4
Weight:Average: 161.1558
Monoisotopic: 161.068807845
InChI Key:OYIFNHCXNCRBQI-BYPYZUCNSA-N
InChI:InChI=1S/C6H11NO4/c7-4(6(10)11)2-1-3-5(8)9/h4H,1-3,7H2,(H,8,9)(H,10,11)/t4-/m0/s1
CAS number:542-32-5
IUPAC Name:(2S)-2-aminohexanedioic acid
Traditional IUPAC Name:aminoadipate
SMILES:N[C@@H](CCCC(O)=O)C(O)=O
Chemical Taxonomy
Description belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentL-alpha-amino acids
Alternative Parents
Substituents
  • L-alpha-amino acid
  • Medium-chain fatty acid
  • Amino fatty acid
  • Dicarboxylic acid or derivatives
  • Fatty acid
  • Fatty acyl
  • Amino acid
  • Carboxylic acid
  • Organopnictogen compound
  • Organic nitrogen compound
  • Amine
  • Organic oxygen compound
  • Primary amine
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
State:Solid
Charge:-1
Melting point:196-198 °C
Experimental Properties:
PropertyValueSource
Water Solubility:2.2 mg/ml [YALKOWSKY,SH & DANNENFELSER,RM (1992)]PhysProp
LogP:-2.936PhysProp
Predicted Properties
PropertyValueSource
Water Solubility32.7 g/LALOGPS
logP-3.4ALOGPS
logP-2.8ChemAxon
logS-0.69ALOGPS
pKa (Strongest Acidic)2.01ChemAxon
pKa (Strongest Basic)9.53ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area100.62 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity35.89 m³·mol⁻¹ChemAxon
Polarizability15.53 ųChemAxon
Number of Rings0ChemAxon
Bioavailability1ChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Biological Properties
Cellular Locations:Cytoplasm
Reactions:
SMPDB Pathways:
Lysine biosynthesisPW000771 ThumbThumb?image type=greyscaleThumb?image type=simple
KEGG Pathways:
EcoCyc Pathways:Not Available
Concentrations
Not Available
Spectra
Spectra:
Spectrum TypeDescriptionSplash Key
GC-MSGC-MS Spectrum - GC-MS (3 TMS)splash10-02vi-1890000000-cb81ff688a4a1d2ee926View in MoNA
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positivesplash10-00xu-9200000000-2a666aa0f9c15fd2295bView in MoNA
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_1_1) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_2_2) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_2_3) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TMS_2_4) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_1_1) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_1_2) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_1_3) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_2_1) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_2_2) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_2_3) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (TBDMS_2_4) - 70eV, PositiveNot AvailableView in JSpectraViewer
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-0002-9600000000-77ab58046847c3ea82f0View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 20V, Positivesplash10-0a4j-9000000000-fced5385ac147b0fd6a0View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 40V, Positivesplash10-0a4i-9000000000-3f7c5858ac3e97d89e6eView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 30V, Positivesplash10-0a4i-9000000000-af6e2d829df2d68bd262View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 40V, Positivesplash10-0a4i-9000000000-3664a98748e89e99cd2dView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-0002-9700000000-e1040cea3fd3c274b468View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 20V, Positivesplash10-052b-9000000000-c9da617e7f36084d0276View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-00kb-9800000000-2738b9d8b78b33fed9f7View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 35V, Positivesplash10-00ke-7900000000-461c76f7d777bbdee97eView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 40V, Positivesplash10-0a4i-9000000000-b096dea8b50a6e2c75c4View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-00ke-7900000000-cfb9ae7bd0906a939368View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 20V, Positivesplash10-0a4j-9000000000-7c27445e72a5da0c3bb6View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-014j-6900000000-f349746a9f0635231c65View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 0V, Positivesplash10-03di-0900000000-1bc82027155d45c9a43dView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 30V, Positivesplash10-0a4i-9000000000-2749c34e547a235a0f78View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 0V, Positivesplash10-03di-0900000000-97545962897518937c04View in MoNA
LC-MS/MSLC-MS/MS Spectrum - 30V, Positivesplash10-0a4i-9000000000-0e2bf30c88b4dafc0c5fView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Positivesplash10-0002-9500000000-83d347e56da993118fbaView in MoNA
LC-MS/MSLC-MS/MS Spectrum - 10V, Negativesplash10-03xu-1900000000-db1ee9542c240bfe00b7View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-00kg-2900000000-3e45ac769d3b229221a3View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-01ba-9600000000-c51318834cc371625d46View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-05fu-9000000000-edbc970f12ea186bcf06View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-03di-1900000000-0f7002659f604cc69395View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-01ox-4900000000-bf42ddc971a2a05516a2View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0abc-9100000000-1979c27463bab7d33d58View in MoNA
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR1H NMR SpectrumNot AvailableView in JSpectraViewer
1D NMR13C NMR SpectrumNot AvailableView in JSpectraViewer
References
References:
  • Diedrich, D. L., Schnaitman, C. A. (1978). "Lysyl-derived aldehydes in outer membrane proteins of Escherichia coli." Proc Natl Acad Sci U S A 75:3708-3712. Pubmed: 358196
  • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114. Pubmed: 22080510
  • Sukhareva, B. S., Malikova, D. G. (1977). "[Substrate specificity of E. coli glutamate decarboxylase]." Mol Biol (Mosk) 11:394-402. Pubmed: 379598
  • Vijayendran, C., Barsch, A., Friehs, K., Niehaus, K., Becker, A., Flaschel, E. (2008). "Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling." Genome Biol 9:R72. Pubmed: 18402659
Synthesis Reference:Waalkes, T.P. etal., J.A.C.S., 1950, 72, 5760; Trown, P.W. etal., Biochem. J., 1963, 86, 280-284; Lerch, E. etal., Helv. Chim. Acta, 1974, 57, 1584-1597; Kondo, M. etal., Bull. Chem. Soc. Jpn., 1985, 58, 1171-1173
Material Safety Data Sheet (MSDS)Download (PDF)
External Links:
ResourceLink
CHEBI ID17082
HMDB IDHMDB00510
Pubchem Compound ID92136
Kegg IDC00956
ChemSpider ID83182
Wikipediaalpha-Aminoadipate
BioCyc IDNot Available
Ligand ExpoUN1

Enzymes

General function:
Involved in glutamate decarboxylase activity
Specific function:
Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria
Gene Name:
gadA
Uniprot ID:
P69908
Molecular weight:
52685
Reactions
L-glutamate = 4-aminobutanoate + CO(2).
General function:
Involved in glutamate decarboxylase activity
Specific function:
Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria
Gene Name:
gadB
Uniprot ID:
P69910
Molecular weight:
52668
Reactions
L-glutamate = 4-aminobutanoate + CO(2).